REDHORSE
- A Software Suite to Detect Recombinations From Next-Generation Sequencing Data
MAIN
INDEX
ANALYTICAL PIPELINE
CONTACT
SYSTEM REQUIREMENTS
REDHORSE Package
Example Data
This page lists the available utilities in REDHORSE.
The analytical pipeline is presented here
.
Generating the input data
Finding Alleles
Listing Alleles
SNV Detection
Filter out SNVs that occur in close proximity
Consolidating SNVs
Generating Merged Allele File
Retain biallelic segments
Filter loci with missing data
Find conventional recombinations
Find double crossovers
Convert merged allele file to multiple alignment fasta file
Standardize merged Allele file
Find conventional recombinations using multiple sequence alignment file
Find Double crossovers using multiple sequence alignment file